PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523584.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 464aa MW: 53107 Da PI: 8.9829

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.2	3.4e-26	48	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r++ lk+plW+e+s+k+ e gf+r+pk+Ckek+en+ k++k++k g+ +++++s++ +++ d+le XP_023523584.1 48 RWPRQETLALLKIRSDMDAIFRDATLKAPLWDEISRKLGELGFNRTPKKCKEKFENVYKYHKRTKIGRCGKSDNSKKVYKFSDELE 133 8********************************************************************99988888899988887 PP
2	trihelix	99.1	3.8e-31	315	399	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r eme +++++ +k+ lWee+s mr g++rs+k+Ckekwen+nk++kk+k+g+kkr e+s+tcpyf+ l+ XP_023523584.1 315 RWPKAEVEALIRLRMEMEMKYEENGQKGLLWEEISGGMRGIGYNRSSKRCKEKWENINKYFKKVKDGKKKR-GEESKTCPYFHLLD 399 8*******************************************************************8.78888****998 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MDVVDSGVAV APPPEAVEGN EVGGSNSGEE DKGLMLFEDG EKNFGGNRWP RQETLALLKI 60 RSDMDAIFRD ATLKAPLWDE ISRKLGELGF NRTPKKCKEK FENVYKYHKR TKIGRCGKSD 120 NSKKVYKFSD ELEAFDIHHH NHISVQSHHR HSIPPPKLIA ASTVSSAINT TINNSLPLNF 180 QNISSANRLF MSSTSSSTAS EEDKDTFRKT KKRKWRDFFV NLTKEVIEKQ ERLQLKFLES 240 LERIENQRKL RDEAWRMKEM TRVNQEHQVL VQETSITAAK DAAVIAFLQN ISPSTPPVPH 300 NAIAKVSTGR GSESRWPKAE VEALIRLRME MEMKYEENGQ KGLLWEEISG GMRGIGYNRS 360 SKRCKEKWEN INKYFKKVKD GKKKRGEESK TCPYFHLLDA LYKEKEKEKQ ASFDMNAQME 420 ALMVEPEQQW PPPFQANHQV LHTTKGEGKE EEKDSGSSST DVED

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MDVVDSGVAV APPPEAVEGN EVGGSNSGEE DKGLMLFEDG EKNFGGNRWP RQETLALLKI  60
RSDMDAIFRD ATLKAPLWDE ISRKLGELGF NRTPKKCKEK FENVYKYHKR TKIGRCGKSD  120
NSKKVYKFSD ELEAFDIHHH NHISVQSHHR HSIPPPKLIA ASTVSSAINT TINNSLPLNF  180
QNISSANRLF MSSTSSSTAS EEDKDTFRKT KKRKWRDFFV NLTKEVIEKQ ERLQLKFLES  240
LERIENQRKL RDEAWRMKEM TRVNQEHQVL VQETSITAAK DAAVIAFLQN ISPSTPPVPH  300
NAIAKVSTGR GSESRWPKAE VEALIRLRME MEMKYEENGQ KGLLWEEISG GMRGIGYNRS  360
SKRCKEKWEN INKYFKKVKD GKKKRGEESK TCPYFHLLDA LYKEKEKEKQ ASFDMNAQME  420
ALMVEPEQQW PPPFQANHQV LHTTKGEGKE EEKDSGSSST DVED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	409	KKKRGEESKTCPYFHLLDALYKEKEKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-57	Trihelix family protein