PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523628.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 757aa    MW: 84756.9 Da    PI: 6.6882
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21100155156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+ +++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  XP_023523628.1 100 RKKYHRHTTEQIREMEALFKDSPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIK 155
                     7999************************************************9877 PP
2START202.71.5e-632744955206
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     +a++el ++a  +ep+W +s     e++n+de+l++f  +++      +++ea+r+++vv+m++ +l ++++d + qW+e+++    ka+t++vi
  XP_023523628.1 274 QALEELKTMAVTNEPLWIRSIetgrEILNYDEYLKTFHLKNSnacwlkRHIEASRDTTVVFMEPSRLIQSFMDEN-QWKEMFPsmisKAATIDVI 367
                     67899999*****************************887779********************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ++g      ga+qlm+ e q+l+plvp R+ +f+R+++ql a++w+ivdvS+d+ ++ + ++s+++ +++pSg++i+++sngh+kvt+veh +++
  XP_023523628.1 368 CNGevanwnGAVQLMFVEVQLLTPLVPtREIYFIRHCKQLDAEQWAIVDVSIDNVDDTNIDASLMKYRKRPSGCIIKDESNGHCKVTMVEHLECE 462
                     *********************************************************999*********************************** PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     +  +h+l+r +v++g+a+ga++w+atlq qce+
  XP_023523628.1 463 KTKVHNLYRTIVNNGTAFGARHWMATLQLQCER 495
                     *******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    
MLADMSNNNN RLAFTKDFFS SPALSLTLAG IFRRGEMAEK GDVEMEEVDD GSGEVRRDDA  60
AEVSSENLGP VRSRSDDDFE GGGVHEENEE GDGGCLVKRR KKYHRHTTEQ IREMEALFKD  120
SPHPDEKQRQ QLSKRLGLSP RQVKFWFQNR RTQIKAIQER HENTLLKAEM EKLREENKAM  180
RELTKKKVGC PNCGTANAAE DRTAFTTTEQ LRIKNAKLKA EVEKLRAALG NHSRSSISPS  240
YSSGNDQETN RNCLDFYTGI FGLEKTRIME RVHQALEELK TMAVTNEPLW IRSIETGREI  300
LNYDEYLKTF HLKNSNACWL KRHIEASRDT TVVFMEPSRL IQSFMDENQW KEMFPSMISK  360
AATIDVICNG EVANWNGAVQ LMFVEVQLLT PLVPTREIYF IRHCKQLDAE QWAIVDVSID  420
NVDDTNIDAS LMKYRKRPSG CIIKDESNGH CKVTMVEHLE CEKTKVHNLY RTIVNNGTAF  480
GARHWMATLQ LQCERLAFFM ATNIPIKDST GVATLAGRKS TLKLAERMSS SFSQAVAASS  540
YQTWTKVVGK TGEDIRVCSR KNLSDPGEPI GVILCAVFSL WLPVPPHTLF HFLRDEARRN  600
EWDAMFGGDK VESIANLAKG QDRGNSTRGS KESSSMWILQ DASTNSSESM VVYSGVDVAG  660
MQSVMTGCDS GSLTILPSGF SILPDGAESR SLLITRQKDH KSSDTHGGAL LTAAVQIVTD  720
ASPSAKPTVD SVEYVKSIVC CTMKNIRSSL GCCEDDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein