PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523662.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 362aa MW: 40227.9 Da PI: 8.3489

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.5	6.3e-22	40	87	2	49
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsr+ XP_023523662.1 40 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRW 87 **********************************************97 PP
2	SBP	44.9	3.1e-14	128	159	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023523662.1 128 CRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 159 59***************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS KCRDYHRRHK 60 VCELHSKTPK VTICGQEQRF CQQCSRWLNQ CWMQIFVRYL HFVFLLLLIF VWLVPFLAFV 120 SVPLTCACRF HSLVEFDDRK RSCRKRLDGH NRRRRKPQPA TMTLNAGRFL YGNQGPRFLP 180 FGNQLLSASN DVSSSWIGMI KPESNAPLCS GNSQFDFGDR RKSMLLPGSL ACDYKEKQLA 240 ISCIPIGLLP KSSDAHPFLD VESSNGENVQ KVFGNGSDQF FNSDCALSLL STPVEPGEIN 300 LSSMSQSNLI TPAHFIHSDG LGLESDPVNS GMVSDGSSHG NIRCYPTFQD GLAGSSVDLF 360 RY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS KCRDYHRRHK  60
VCELHSKTPK VTICGQEQRF CQQCSRWLNQ CWMQIFVRYL HFVFLLLLIF VWLVPFLAFV  120
SVPLTCACRF HSLVEFDDRK RSCRKRLDGH NRRRRKPQPA TMTLNAGRFL YGNQGPRFLP  180
FGNQLLSASN DVSSSWIGMI KPESNAPLCS GNSQFDFGDR RKSMLLPGSL ACDYKEKQLA  240
ISCIPIGLLP KSSDAHPFLD VESSNGENVQ KVFGNGSDQF FNSDCALSLL STPVEPGEIN  300
LSSMSQSNLI TPAHFIHSDG LGLESDPVNS GMVSDGSSHG NIRCYPTFQD GLAGSSVDLF  360
RY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	156	RKRSCRKRLDGHNRRRRK
2	139	157	RKRSCRKRLDGHNRRRRKP
3	140	158	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-38	SBP family protein