PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523747.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 162aa    MW: 18495.9 Da    PI: 10.7682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_023523747.1 12 RGHWRPAEDAKLKEVVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 57
                     899*****************************.***********996 PP
2Myb_DNA-binding57.62.9e-1864107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+e+l +a++ +G++ W+ Iar+++ gRt++ +k++w+ 
   XP_023523747.1  64 RGAFTHEEEERLMQAHRVHGNK-WAMIARMFP-GRTDNGVKNHWHV 107
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MNSGTNAKGC ARGHWRPAED AKLKEVVALY GPQNWNLIAE KLDGRSGKSC RLRWFNQLDP  60
RINRGAFTHE EEERLMQAHR VHGNKWAMIA RMFPGRTDNG VKNHWHVIMA RKCRHHFAAG  120
RRRRRTTTSD EDSATNEPPS FMDRSVEPAL FFDFLGVGGG PT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111124RKCRHHFAAGRRRR
2121126RRRRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-67MYB family protein