PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523845.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family Whirly
Protein Properties Length: 239aa    MW: 26671.7 Da    PI: 10.1265
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly175.41.2e-54631982137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+ka +++ + +ptf++l+sg+l+++r+G++ll++ +a++erkydW kkq f+ls+tev++l++l++++sceffhdp++ +s +G+vrk+l +
  XP_023523845.1  63 VYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLSPTEVGTLINLGPRDSCEFFHDPGMLSSTAGQVRKSLTI 157
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + ++dG G+f++l+v  +   ++e +svP + +ef+v++++
  XP_023523845.1 158 KAHADGNGYFISLNVVDNTKSTKEFLSVPFTAGEFSVMKTA 198
                     ******************99999999*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MLKLQRWLSR NQLFEQVVCK KAGHVDHAFG SHPFSSGVGI PGQKFTHTVP KNENDRVYAA  60
YNVYKGKAGV SMFPCLPTFT KLESGSLVID RRGSILLTFF PAIGERKYDW TKKQFFSLSP  120
TEVGTLINLG PRDSCEFFHD PGMLSSTAGQ VRKSLTIKAH ADGNGYFISL NVVDNTKSTK  180
EFLSVPFTAG EFSVMKTACS FALPHILGWD RLTKPSLGME KGFQPNKVNR EGLSLEWKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-77Whirly family protein