PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523891.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28276.2 Da    PI: 9.0743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRr g+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_023523891.1  9 KRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box96.34.7e-328317310100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++ es+++e+ kLk++ e+Lqr+qR+llGe+L++L+ keL+qLe+qLe+slk++Rs+K++++l+q+++lq+ke++l e+n++L+ klee
  XP_023523891.1  83 PAKELESSYREYLKLKARFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRSLTLKLEE 173
                     5678999*******************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRSGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QKCSYGAVEV AKPAKELESS YREYLKLKAR FESLQRTQRN LLGEELGPLN  120
SKELEQLERQ LESSLKQVRS TKTQYMLDQL SDLQNKEQML IETNRSLTLK LEEMSSRNNI  180
RLTWEEVDQS MSYAPQNAQT QGFFQPLDCN PTLQIGYSGS VSDQITATTA PNHAQQVNAF  240
LPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-117MIKC_MADS family protein