PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523894.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 788aa MW: 88872 Da PI: 6.3935

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.5	1.5e-29	543	593	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+le+l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_023523894.1 543 EKSITLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 593 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence
MDFDYMDGLL LDDCWLETAD GTVFLHPNLS SFGANLDPLI GWPATEMNGV FNTNLITRSD 60 QEEPRNMLSN EASPGRERVD VGQEGCSDQS ENNALEGSEL CRRLGMGAGE HMGSAPSVME 120 RLIMAVEYIK DIVRDKDVLV QVWVPVSRGG RSVLITNQLP FSQNSSCTRL AKYRDVSVNY 180 EFTADEESKK ALGLPGRVFL RKVPEWTPDV RFFRSDEYPR VDHAHEHDVR GTIALPVFEQ 240 GSKSCLGVIE VVMVTQQIKY GSEHEILCKA LQAVKLRSSD VISPPNQKVF NRFNEAVLLE 300 IRDTLRTACE THGLPLAQAW ASCIQQSKEG CRHSDENYSC CVSTVDRACF VADTRIQDFH 360 EACSEHHLLK GEGIVGMAFK SNEPCFSSDI ASFRNTEYPL SHHAKLFGLH AAVALRLRCI 420 FISKMDFVLE FFLPVHCRDP EEQRILLTSL STVIQYSCRN LRLVTDEECR EENMEQPLPT 480 NSLLASSVQN IQQCSGSVSL LQELNYDLNG VVEDSEECPT VGNGIFADIS MGRTGEKRRT 540 KVEKSITLEV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKL 600 QLVIDSVNSA SGAFQTSSLY SNLQELASPY VRKMGDGLKT SSDLGDAASK TAPSSLSQSS 660 NSSQCFSFCR HPATGCVMQT AKESDQMRVK VSYGEERIRF RVQKWWRYEE LVKEVGRRFN 720 IRDISKYDLK YLDDECEWVL LTSDAYLQDC FHMYKSSPLQ TIKLLLHPSP RHMREEPQTP 780 PFPTFYML

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence

MDFDYMDGLL LDDCWLETAD GTVFLHPNLS SFGANLDPLI GWPATEMNGV FNTNLITRSD  60
QEEPRNMLSN EASPGRERVD VGQEGCSDQS ENNALEGSEL CRRLGMGAGE HMGSAPSVME  120
RLIMAVEYIK DIVRDKDVLV QVWVPVSRGG RSVLITNQLP FSQNSSCTRL AKYRDVSVNY  180
EFTADEESKK ALGLPGRVFL RKVPEWTPDV RFFRSDEYPR VDHAHEHDVR GTIALPVFEQ  240
GSKSCLGVIE VVMVTQQIKY GSEHEILCKA LQAVKLRSSD VISPPNQKVF NRFNEAVLLE  300
IRDTLRTACE THGLPLAQAW ASCIQQSKEG CRHSDENYSC CVSTVDRACF VADTRIQDFH  360
EACSEHHLLK GEGIVGMAFK SNEPCFSSDI ASFRNTEYPL SHHAKLFGLH AAVALRLRCI  420
FISKMDFVLE FFLPVHCRDP EEQRILLTSL STVIQYSCRN LRLVTDEECR EENMEQPLPT  480
NSLLASSVQN IQQCSGSVSL LQELNYDLNG VVEDSEECPT VGNGIFADIS MGRTGEKRRT  540
KVEKSITLEV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKL  600
QLVIDSVNSA SGAFQTSSLY SNLQELASPY VRKMGDGLKT SSDLGDAASK TAPSSLSQSS  660
NSSQCFSFCR HPATGCVMQT AKESDQMRVK VSYGEERIRF RVQKWWRYEE LVKEVGRRFN  720
IRDISKYDLK YLDDECEWVL LTSDAYLQDC FHMYKSSPLQ TIKLLLHPSP RHMREEPQTP  780
PFPTFYML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein