PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524060.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 908aa MW: 100919 Da PI: 5.6999

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	8.9e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023524060.1 37 KGHWTPEEDEILRKAVDHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 789**************************9.**********986 PP
2	Myb_DNA-binding	66	6.8e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l XP_023524060.1 89 KGPWSKEEDETIVELVKKYGPKKWSTIAKHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.8	1.6e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023524060.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence
MEGDKTISTP SDNPEVGDQR IRALHGRTSG PTRRSTKGHW TPEEDEILRK AVDHFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDETI VELVKKYGPK KWSTIAKHLP 120 GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLS QLQDPISVGQ PNQLLASSSK VLGSGNDSGS YGMETEEISE 240 CSQDATVADS FMIDSACETL HMRKEVQLIE DLGLGKEQSS EPYYHHHPAM EEITCPIAEF 300 DQEVGHCLSP SEKNPSHDCR TTSNREYQCH LNEFPNISSL QLDKAPQFEA IGTGMGESHG 360 AGSSAQNPSM VKGATASVQI ECRFISDDEF CRVLFSDSKS DQCNLSINLR KGSYVPEMCD 420 FEVPVQSLGT RKVENNHPSA SQVYDYPPGS DVQEKNLLPQ SCMHIPSVVS VNNEMILLGG 480 TGSNKLFVGA REHECVTSQE NGFVYDGGTS RPSCFHVTDN PEMQEQSTGT CSHERPKPHN 540 ENLDSGVLCY EPPRFPSLDV PFFNCDLIQA GSEMQYSPLG IRQLMMSSLN GVTPFRLWDS 600 PSHDTSPDAV LKNAAETFSS TPSILKKRHR DFLSPLSDRR IDKKLETVVT SRLTENFSRL 660 DVVFKDGPES TEDKENMHCT FEKKQGTADV EICVQSTAEI VASGVLVEHD ANDLLLHSVD 720 QNTLSSSARI KKRHSSENLH GPSSTPNYCK NHPESNSVAS TCELPVILSA SVKKTDDDRP 780 QIANTGIASL PGETPVKRSI DSPSAWMSPW FFNSFLPGPR IDTEISIEDI GYFSSPKERS 840 LDAIGLMKQV SERTAAACAS AHEVLGNETP ETLLRGSRMK HRHCDETVLA ECRTLDFSEC 900 GSPGEMGT

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence

MEGDKTISTP SDNPEVGDQR IRALHGRTSG PTRRSTKGHW TPEEDEILRK AVDHFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDETI VELVKKYGPK KWSTIAKHLP  120
GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLS QLQDPISVGQ PNQLLASSSK VLGSGNDSGS YGMETEEISE  240
CSQDATVADS FMIDSACETL HMRKEVQLIE DLGLGKEQSS EPYYHHHPAM EEITCPIAEF  300
DQEVGHCLSP SEKNPSHDCR TTSNREYQCH LNEFPNISSL QLDKAPQFEA IGTGMGESHG  360
AGSSAQNPSM VKGATASVQI ECRFISDDEF CRVLFSDSKS DQCNLSINLR KGSYVPEMCD  420
FEVPVQSLGT RKVENNHPSA SQVYDYPPGS DVQEKNLLPQ SCMHIPSVVS VNNEMILLGG  480
TGSNKLFVGA REHECVTSQE NGFVYDGGTS RPSCFHVTDN PEMQEQSTGT CSHERPKPHN  540
ENLDSGVLCY EPPRFPSLDV PFFNCDLIQA GSEMQYSPLG IRQLMMSSLN GVTPFRLWDS  600
PSHDTSPDAV LKNAAETFSS TPSILKKRHR DFLSPLSDRR IDKKLETVVT SRLTENFSRL  660
DVVFKDGPES TEDKENMHCT FEKKQGTADV EICVQSTAEI VASGVLVEHD ANDLLLHSVD  720
QNTLSSSARI KKRHSSENLH GPSSTPNYCK NHPESNSVAS TCELPVILSA SVKKTDDDRP  780
QIANTGIASL PGETPVKRSI DSPSAWMSPW FFNSFLPGPR IDTEISIEDI GYFSSPKERS  840
LDAIGLMKQV SERTAAACAS AHEVLGNETP ETLLRGSRMK HRHCDETVLA ECRTLDFSEC  900
GSPGEMGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein