PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524065.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 885aa MW: 98547.2 Da PI: 5.8342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	14	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023524065.1 14 KGHWTPEEDEILRKAVDHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 60 789**************************9.**********986 PP
2	Myb_DNA-binding	66.1	6.6e-21	66	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l XP_023524065.1 66 KGPWSKEEDETIVELVKKYGPKKWSTIAKHLP-GRIGKQCRERWHNHL 112 79****************************.***********97 PP
3	Myb_DNA-binding	48.9	1.6e-15	118	160	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023524065.1 118 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 160 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence
MFRRTSGPTR RSTKGHWTPE EDEILRKAVD HFKGKNWKKI AECFKDRTDV QCLHRWQKVL 60 NPELVKGPWS KEEDETIVEL VKKYGPKKWS TIAKHLPGRI GKQCRERWHN HLNPNINKEA 120 WTQEEELALI RAHQIYGNRW AELTKFLPGR TDNAIKNHWN SSVKKKLDSY LASGLLSQLQ 180 DPISVGQPNQ LLASSSKVLG SGNDSGSYGM ETEEISECSQ DATVADSFMI DSACETLHMR 240 KEVQLIEDLG LGKEQSSEPY YHHHPAMEEI TCPIAEFDQE VGHCLSPSEK NPSHDCRTTS 300 NREYQCHLNE FPNISSLQLD KAPQFEAIGT GMGESHGAGS SAQNPSMVKG ATASVQIECR 360 FISDDEFCRV LFSDSKSDQC NLSINLRKGS YVPEMCDFEV PVQSLGTRKV ENNHPSASQV 420 YDYPPGSDVQ EKNLLPQSCM HIPSVVSVNN EMILLGGTGS NKLFVGAREH ECVTSQENGF 480 VYDGGTSRPS CFHVTDNPEM QEQSTGTCSH ERPKPHNENL DSGVLCYEPP RFPSLDVPFF 540 NCDLIQAGSE MQYSPLGIRQ LMMSSLNGVT PFRLWDSPSH DTSPDAVLKN AAETFSSTPS 600 ILKKRHRDFL SPLSDRRIDK KLETVVTSRL TENFSRLDVV FKDGPESTED KENMHCTFEK 660 KQGTADVEIC VQSTAEIVAS GVLVEHDAND LLLHSVDQNT LSSSARIKKR HSSENLHGPS 720 STPNYCKNHP ESNSVASTCE LPVILSASVK KTDDDRPQIA NTGIASLPGE TPVKRSIDSP 780 SAWMSPWFFN SFLPGPRIDT EISIEDIGYF SSPKERSLDA IGLMKQVSER TAAACASAHE 840 VLGNETPETL LRGSRMKHRH CDETVLAECR TLDFSECGSP GEMGT

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence

MFRRTSGPTR RSTKGHWTPE EDEILRKAVD HFKGKNWKKI AECFKDRTDV QCLHRWQKVL  60
NPELVKGPWS KEEDETIVEL VKKYGPKKWS TIAKHLPGRI GKQCRERWHN HLNPNINKEA  120
WTQEEELALI RAHQIYGNRW AELTKFLPGR TDNAIKNHWN SSVKKKLDSY LASGLLSQLQ  180
DPISVGQPNQ LLASSSKVLG SGNDSGSYGM ETEEISECSQ DATVADSFMI DSACETLHMR  240
KEVQLIEDLG LGKEQSSEPY YHHHPAMEEI TCPIAEFDQE VGHCLSPSEK NPSHDCRTTS  300
NREYQCHLNE FPNISSLQLD KAPQFEAIGT GMGESHGAGS SAQNPSMVKG ATASVQIECR  360
FISDDEFCRV LFSDSKSDQC NLSINLRKGS YVPEMCDFEV PVQSLGTRKV ENNHPSASQV  420
YDYPPGSDVQ EKNLLPQSCM HIPSVVSVNN EMILLGGTGS NKLFVGAREH ECVTSQENGF  480
VYDGGTSRPS CFHVTDNPEM QEQSTGTCSH ERPKPHNENL DSGVLCYEPP RFPSLDVPFF  540
NCDLIQAGSE MQYSPLGIRQ LMMSSLNGVT PFRLWDSPSH DTSPDAVLKN AAETFSSTPS  600
ILKKRHRDFL SPLSDRRIDK KLETVVTSRL TENFSRLDVV FKDGPESTED KENMHCTFEK  660
KQGTADVEIC VQSTAEIVAS GVLVEHDAND LLLHSVDQNT LSSSARIKKR HSSENLHGPS  720
STPNYCKNHP ESNSVASTCE LPVILSASVK KTDDDRPQIA NTGIASLPGE TPVKRSIDSP  780
SAWMSPWFFN SFLPGPRIDT EISIEDIGYF SSPKERSLDA IGLMKQVSER TAAACASAHE  840
VLGNETPETL LRGSRMKHRH CDETVLAECR TLDFSECGSP GEMGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein