PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524093.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 737aa MW: 82620 Da PI: 4.5

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.1e-10	584	625	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + e++++av+q+G++ + I + ++ g+t+ q+k+++ + XP_023524093.1 584 KWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GKTRHQIKLKFKN 625 8*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MDPFDDILSD PSVSSRTGSR FQPKIKPRPK KPTLAPQSCT HSQDKKETVS DAKSCHDGRG 60 NTKSIESSSQ LPVIEENKES EDDLLLATAR SDFISSHPPS VESAKTVDSM QLDFDSCGSI 120 LPSGSTTDDP VGVKKLTDTK NTGILNYSTP SSSTAHEATV LDQSGLGSIQ TEDRHFSDGK 180 IPEENIDIFY ELEYLDDFHN QPKNEADPAS LNQASISSED GDLDKQRLEI EERGAGADIT 240 MDTISSGDTS PSEQPACNYT TKPKIKTAEE DACMEISQPE ISDMLPPSPQ VISHDTRCMH 300 DTSIGSDFDG ILNDSSINFD GYTPVNQHTE APVNVEPLAF DSYDDILVDD FNSDDQDPSR 360 EVSGKTGEGK PSMESNISQP QEMFSQVGEE IQQSKTSRKS RKKVSHQPDE PEDGVDENRN 420 FPNETSKAGP SRGKKASKKS SKPSSDSEKP ARKRKQANKS VPDTQAEKRP KKFSHSTRRN 480 RRQVNKVLLE TPEDEIDFQK ISFRDLIIYH EYKEKLEKKE ASMRKSATNQ RTDTAGEEIF 540 NDGEESLASE QGRGTDDEET PDVVDMTSAY FNYHSFMDKT PRIKWSKHDT ERFYEAVRQF 600 GTDFCMIQQL FPGKTRHQIK LKFKNEERHH PFRLSDAVTN RATDHTQFLS LIGQLKEAAN 660 KAKQESNQDE LTENTGDEEL PELSPETNEE VAKPEGEEVQ ETGKEECIGE IHSPLKADEN 720 ESDEDDPHRW DEYKFDF

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MDPFDDILSD PSVSSRTGSR FQPKIKPRPK KPTLAPQSCT HSQDKKETVS DAKSCHDGRG  60
NTKSIESSSQ LPVIEENKES EDDLLLATAR SDFISSHPPS VESAKTVDSM QLDFDSCGSI  120
LPSGSTTDDP VGVKKLTDTK NTGILNYSTP SSSTAHEATV LDQSGLGSIQ TEDRHFSDGK  180
IPEENIDIFY ELEYLDDFHN QPKNEADPAS LNQASISSED GDLDKQRLEI EERGAGADIT  240
MDTISSGDTS PSEQPACNYT TKPKIKTAEE DACMEISQPE ISDMLPPSPQ VISHDTRCMH  300
DTSIGSDFDG ILNDSSINFD GYTPVNQHTE APVNVEPLAF DSYDDILVDD FNSDDQDPSR  360
EVSGKTGEGK PSMESNISQP QEMFSQVGEE IQQSKTSRKS RKKVSHQPDE PEDGVDENRN  420
FPNETSKAGP SRGKKASKKS SKPSSDSEKP ARKRKQANKS VPDTQAEKRP KKFSHSTRRN  480
RRQVNKVLLE TPEDEIDFQK ISFRDLIIYH EYKEKLEKKE ASMRKSATNQ RTDTAGEEIF  540
NDGEESLASE QGRGTDDEET PDVVDMTSAY FNYHSFMDKT PRIKWSKHDT ERFYEAVRQF  600
GTDFCMIQQL FPGKTRHQIK LKFKNEERHH PFRLSDAVTN RATDHTQFLS LIGQLKEAAN  660
KAKQESNQDE LTENTGDEEL PELSPETNEE VAKPEGEEVQ ETGKEECIGE IHSPLKADEN  720
ESDEDDPHRW DEYKFDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	442	RKSRKKVSHQPDEPEDGVDENRNFPNETSKAGPSRGKKASKKSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-34	MYB_related family protein