PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023524124.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 611aa    MW: 68409.3 Da    PI: 6.5959
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023524124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.79.8e-27198251155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+ k+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_023524124.1 198 KPRVVWSVELHRKFVNAVNQL-GIDKAVRKRILDLMNVEKLTRENVASHLQKYRL 251
                     79*******************.********************************8 PP
2Myb_DNA-binding35.13.1e-11200250148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v+av+qlG +    k+I   m+ +++t++++ s++qky+
   XP_023524124.1 200 RVVWSVELHRKFVNAVNQLGIDkaVRKRILDLMNvEKLTRENVASHLQKYR 250
                      678********************************99*************7 PP
3Response_reg76.31.1e-25201281109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ + +l+++l++ +y +v+++ ++  al+ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  G
  XP_023524124.1  20 VLAVDDDPTCLLILETLLRRCHY-HVTTTNQAIMALKLLRENKnkFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHG 112
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_023524124.1 113 ACDYLLKPVRIEELKN 128
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    
MTVEPRVDDP KDQFPVGMRV LAVDDDPTCL LILETLLRRC HYHVTTTNQA IMALKLLREN  60
KNKFDVVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIT HGACDYLLKP  120
VRIEELKNIW QHVMRRKKFD PKDQMNSINQ AKHDYENGEE VADPNGKFKK KRKDHNYDED  180
DDQDYNGQED DDSSTQKKPR VVWSVELHRK FVNAVNQLGI DKAVRKRILD LMNVEKLTRE  240
NVASHLQKYR LYLRRISCVA NQQANMVTAL SSADPSYMRI GSLNGIGNFH SVTGPPPFPN  300
TAYRSIPTTG MLGRLNTPAC MGMNGLSSPG TVPLESTFQP RTRSANMFQG MPESSGLDQV  360
QHVKHGTHVD DLARAFDQRT VFSAAGHLSN DPLISVVSAS LESSRPSVDS IRCTGDDWSK  420
AARSSRMLLH IGNCVSDIAS ISTQSHDSRT DTQCQAATNS NRYDRVITKV PVQDWNDLED  480
AYYDTTVACS SSNSFVPLNG AAETLPKRFE NQNTIFSRSK DFNVPSRAND LDRAMVDHDQ  540
FKKSSIETSI MLKQGVLYDH QQKMQARFCS SNCGSLEDIA CAMMKQEQDG AKLLEGDFGC  600
DNFPIGTCTC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135173RRKKFDPKDQMNSINQAKHDYENGEEVADPNGKFKKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-134ARR-B family protein