PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023524361.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27574.8 Da    PI: 5.3233
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023524361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-1962115356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++++++q+++Le++Fe ++++  e++ ++A++l+L+ rqV++WFqNrRa++k
  XP_023524361.1  62 RKRRLKPDQVKALERHFEVENKLEPERKMKIATELELEPRQVTIWFQNRRARWK 115
                     445899***********************************************9 PP
2HD-ZIP_I/II123.21.2e-3961153193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     e+krrl+ +qvk+LE++Fe e+kLeperK+++a+eL+l+prqv +WFqnrRAR+ktkqlE+dy +Lk++ydalk + + Leke+++L+++++e
  XP_023524361.1  61 ERKRRLKPDQVKALERHFEVENKLEPERKMKIATELELEPRQVTIWFQNRRARWKTKQLERDYGVLKANYDALKLDYDVLEKENASLASKVRE 153
                     69**************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MMMRFDRSES LDSFSSIFTP KEQPSSTTIG GYSKEFQAML DSLEEEDNSE DGGGSSGSAP  60
ERKRRLKPDQ VKALERHFEV ENKLEPERKM KIATELELEP RQVTIWFQNR RARWKTKQLE  120
RDYGVLKANY DALKLDYDVL EKENASLASK VRELREKVSR EGTKMKIQRE LKDEKNSFVS  180
TNNNSSLNSM LNSFELSRKV YENQTQFTKA MNEDQSLFNT EEPCNFCSVD QAPSLHW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166ERKRRL
26291RKRRLKPDQVKALERHFEVENKLEPERKMK
3110118RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-45HD-ZIP family protein