PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524478.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 519aa MW: 58030.2 Da PI: 7.5948

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.3e-08	397	445	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l XP_023524478.1 397 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFsssSHRTSVDLKDKWRNLL 445 5**********************876558999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPAPEDDV LGVEHFLQPD YNKCFPGSVL 60 DFNTFHSHKC LSIENFSFAV EFDQIKIDSE SLHSSLTLEG ERTKQEVRDE KSKGTDDVVC 120 SGINKLSGTV NRQTTDDIFN LAPGSCNASF LGNVDFGYPQ GFCTTDLGVD LSFAGVAGHN 180 VGFDQKDAKL MISSSTGSSG CSGSSTACLN DENMSDDRPV KRKRLSSCDS SKINSEHNES 240 KIVPFNEGNK VETLVTEKRL RKPPRRYSEE SIEQKSRSNF KKSALKASKD KSLPSVCHRH 300 QWQKKLKAAP IVPKDKSFNG GCIQVPFGLP IEEGHSTKKR ICWEPEEIKD NRILCIKDKN 360 DVESFSAESD DENTEDECVM KGNTTQKGNS RRKHHISWTL SEVMKLVEGV SEYGVGRWTE 420 IKRLQFSSSS HRTSVDLKDK WRNLLKASDT QLQNRRKVVL GRKQALQQVP ESVLCRVREL 480 AAIYPYPREN KSKDTCSAPT TSSFKSTTSN MLVCLPTVM

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPAPEDDV LGVEHFLQPD YNKCFPGSVL  60
DFNTFHSHKC LSIENFSFAV EFDQIKIDSE SLHSSLTLEG ERTKQEVRDE KSKGTDDVVC  120
SGINKLSGTV NRQTTDDIFN LAPGSCNASF LGNVDFGYPQ GFCTTDLGVD LSFAGVAGHN  180
VGFDQKDAKL MISSSTGSSG CSGSSTACLN DENMSDDRPV KRKRLSSCDS SKINSEHNES  240
KIVPFNEGNK VETLVTEKRL RKPPRRYSEE SIEQKSRSNF KKSALKASKD KSLPSVCHRH  300
QWQKKLKAAP IVPKDKSFNG GCIQVPFGLP IEEGHSTKKR ICWEPEEIKD NRILCIKDKN  360
DVESFSAESD DENTEDECVM KGNTTQKGNS RRKHHISWTL SEVMKLVEGV SEYGVGRWTE  420
IKRLQFSSSS HRTSVDLKDK WRNLLKASDT QLQNRRKVVL GRKQALQQVP ESVLCRVREL  480
AAIYPYPREN KSKDTCSAPT TSSFKSTTSN MLVCLPTVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-29	MYB_related family protein