PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524479.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 517aa MW: 57860 Da PI: 7.5948

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.2e-08	395	443	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l XP_023524479.1 395 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFsssSHRTSVDLKDKWRNLL 443 5**********************876558999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPAPEDDV LGVEHFLQPD YNKCFPGSVL 60 DFNTFHSHKC LSIENFSFAV EFDQIKIDSE SLHSSLTLEG ERTKQEVRDE KSKGTDDVVC 120 SGINKLSGTV NRQTTDDIFN LAPGSCNASF LGNVDFGYPQ GFCTTDLGVD LSFAGGHNVG 180 FDQKDAKLMI SSSTGSSGCS GSSTACLNDE NMSDDRPVKR KRLSSCDSSK INSEHNESKI 240 VPFNEGNKVE TLVTEKRLRK PPRRYSEESI EQKSRSNFKK SALKASKDKS LPSVCHRHQW 300 QKKLKAAPIV PKDKSFNGGC IQVPFGLPIE EGHSTKKRIC WEPEEIKDNR ILCIKDKNDV 360 ESFSAESDDE NTEDECVMKG NTTQKGNSRR KHHISWTLSE VMKLVEGVSE YGVGRWTEIK 420 RLQFSSSSHR TSVDLKDKWR NLLKASDTQL QNRRKVVLGR KQALQQVPES VLCRVRELAA 480 IYPYPRENKS KDTCSAPTTS SFKSTTSNML VCLPTVM

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPAPEDDV LGVEHFLQPD YNKCFPGSVL  60
DFNTFHSHKC LSIENFSFAV EFDQIKIDSE SLHSSLTLEG ERTKQEVRDE KSKGTDDVVC  120
SGINKLSGTV NRQTTDDIFN LAPGSCNASF LGNVDFGYPQ GFCTTDLGVD LSFAGGHNVG  180
FDQKDAKLMI SSSTGSSGCS GSSTACLNDE NMSDDRPVKR KRLSSCDSSK INSEHNESKI  240
VPFNEGNKVE TLVTEKRLRK PPRRYSEESI EQKSRSNFKK SALKASKDKS LPSVCHRHQW  300
QKKLKAAPIV PKDKSFNGGC IQVPFGLPIE EGHSTKKRIC WEPEEIKDNR ILCIKDKNDV  360
ESFSAESDDE NTEDECVMKG NTTQKGNSRR KHHISWTLSE VMKLVEGVSE YGVGRWTEIK  420
RLQFSSSSHR TSVDLKDKWR NLLKASDTQL QNRRKVVLGR KQALQQVPES VLCRVRELAA  480
IYPYPRENKS KDTCSAPTTS SFKSTTSNML VCLPTVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-29	MYB_related family protein