PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524482.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 854aa MW: 94409.4 Da PI: 7.1677

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.7e-19	324	423	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++ XP_023524482.1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPVRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGQ 416 99************************555556677***********99899999999.*******************887.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_023524482.1 417 LVMGFRK 423 7777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence
MNTSCGAATP HDWTKGWPLG SAGFAHLCLN CGSAYENLVF CDTYHSEETG WRDCSFCGKR 60 IHCGCIASKS MFEYLDYGGI GCTTCVKRSR LDVIRRDEIS NGFDAVTVGN VGLLRPASVE 120 DRVVRNGIKE EKLLQLCNIM EANETDHFQQ AQRVDRSASP AQNKVENLRS PFGEVGTSFF 180 NMTKLPVKCQ PSVGSVAYSQ LDTRLKDMQE SLSQPSLNIT LGVPLGTPNF VVPLSGSAAE 240 EDEKSILPFQ QGQRSRPIFP KPLKTGTTVN SETRKGMTPL VRIARPPAEG RGKNQLLPRY 300 WPRITDQELE QISGDLNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGLP 360 VRIQDVKGNE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR IDPGGQLVMG 420 FRKATNSSDT QDAKISTLPN GSHSGDASFS GVFQNLPLRA GDISLHKIEN FGGRMTSGQQ 480 PMSTMDKKGT RNIGSKNKRL LMHSEDALEL RLTWEEAQDL LRPPPSANPT IVTIDDHEFE 540 EYDEPPVFGK RTIFTVRPTG EQKQWAQCDD CSKWRKLPVD VLLPPKWTCS DNIWDLSRCT 600 CSAPEEMNTK EQENLLRASK DFKKRKIMKS QKSAQELEPS GLDALASAAV LGDSMADLQE 660 SGTTTRHPRH RQGCTCIVCI QPPSGKGKHK STCTCNVCLT VKRRFKTLML RKKKRLSERE 720 METSLKEGNS QFDESGTSGT LRGTSLQINH SENERSQIRV KDEEAANSSG QIDLNCHPDR 780 EDMQLEVAGL SMMSLVEAAS QPLDSYSKQI GVSSVTSEQH SSQPSSAESE RPLSEEGCHG 840 SAHESTSDRG RGPH

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence

MNTSCGAATP HDWTKGWPLG SAGFAHLCLN CGSAYENLVF CDTYHSEETG WRDCSFCGKR  60
IHCGCIASKS MFEYLDYGGI GCTTCVKRSR LDVIRRDEIS NGFDAVTVGN VGLLRPASVE  120
DRVVRNGIKE EKLLQLCNIM EANETDHFQQ AQRVDRSASP AQNKVENLRS PFGEVGTSFF  180
NMTKLPVKCQ PSVGSVAYSQ LDTRLKDMQE SLSQPSLNIT LGVPLGTPNF VVPLSGSAAE  240
EDEKSILPFQ QGQRSRPIFP KPLKTGTTVN SETRKGMTPL VRIARPPAEG RGKNQLLPRY  300
WPRITDQELE QISGDLNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGLP  360
VRIQDVKGNE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR IDPGGQLVMG  420
FRKATNSSDT QDAKISTLPN GSHSGDASFS GVFQNLPLRA GDISLHKIEN FGGRMTSGQQ  480
PMSTMDKKGT RNIGSKNKRL LMHSEDALEL RLTWEEAQDL LRPPPSANPT IVTIDDHEFE  540
EYDEPPVFGK RTIFTVRPTG EQKQWAQCDD CSKWRKLPVD VLLPPKWTCS DNIWDLSRCT  600
CSAPEEMNTK EQENLLRASK DFKKRKIMKS QKSAQELEPS GLDALASAAV LGDSMADLQE  660
SGTTTRHPRH RQGCTCIVCI QPPSGKGKHK STCTCNVCLT VKRRFKTLML RKKKRLSERE  720
METSLKEGNS QFDESGTSGT LRGTSLQINH SENERSQIRV KDEEAANSSG QIDLNCHPDR  780
EDMQLEVAGL SMMSLVEAAS QPLDSYSKQI GVSSVTSEQH SSQPSSAESE RPLSEEGCHG  840
SAHESTSDRG RGPH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	702	713	KRRFKTLMLRKK
2	702	715	KRRFKTLMLRKKKR
3	710	716	LRKKKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein