PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023524862.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 359aa    MW: 40711.1 Da    PI: 6.5086
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023524862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.9e-211053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + e++  rqvt+skRr+gilKKA EL +LCd+++++++fs+tg+
  XP_023524862.1 10 KLESTGSRQVTYSKRRHGILKKARELAILCDIDILLLMFSPTGR 53
                    5688999***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MGRVKLKIKK LESTGSRQVT YSKRRHGILK KARELAILCD IDILLLMFSP TGRPTLYQGE  60
RSNIEEVITK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDSEELTNE  120
VSILRDQIAD SHKRLSYWRN LDNINNIEHL QKMEDLARES LNQMRLHKEN VRRHQILSQD  180
FTCQYPGGGM SLPLMMDEMQ GTQPLLWLPN YCSQQIALPN EPSFLQPGDV ECSMATSFSS  240
FPSFFNPGKQ LEAGISGQVD SMPQGDGGLN ELSGTSCSTL QLGDQYPYPT CDVSNFQDDK  300
KLNLEMEMNL HANCINNQLN GKLELSRALY GDDQHPWASI PGPCSIPMYQ SNAYHHQPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-82M-type_MADS family protein