PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525090.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 206aa    MW: 22438.2 Da    PI: 7.8494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.2e-292102196
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_023525090.1   2 SCNGCRVLRKGCSEACVLRSSLhwidsPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelal 96 
                     +ae++l
  XP_023525090.1  97 AAETVL 102
                     **9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MSCNGCRVLR KGCSEACVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLLS FISAVPHHQR  60
SALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCQAAAET VLRGGVPRAN LGIEFSGNPT  120
AETESSLSLN TDVWTSTTQN IQFYPSSQFD SRRLSDLSLA TGKGKTHPLE NRRSLDSEES  180
VMTSFGSADH SDGDRRKERK LLNLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194201DRRKERKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-61LBD family protein