PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525421.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 27022.5 Da PI: 8.6885

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.4e-17	93	147	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq Lee F+ ++++ +++ eLA++l+L rqV vWFqNrRa+ k XP_023525421.1 93 RKKLRLSREQSAFLEESFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTK 147 788899***********************************************98 PP
2	HD-ZIP_I/II	121.8	3.5e-39	93	183	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rls+eq+++LEesF+ +++L p++Kvelar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+++n++L+ke ++Lr +lk XP_023525421.1 93 RKKLRLSREQSAFLEESFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNRKLRKELQDLR-ALK 183 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MELGLRLGDQ QQTHSHNPKL LPSFFHPPPI LHLALLPPTP TPTPDGGGGE SPRNPYLCSS 60 LELGLYEVED HQGNSDRGCS RGSDEDDQIL GSRKKLRLSR EQSAFLEESF KDHHTLYPKQ 120 KVELARRLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKN CCQTLTQQNR KLRKELQDLR 180 ALKTTDSLFM HSPATTLTMC ASCERAAVLH PLNSKASGFS FTTNGSFPFS PTDPSTPKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	98	SRKKLRL
2	142	150	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-62	HD-ZIP family protein