PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525656.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 196aa    MW: 21325.3 Da    PI: 6.9697
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.6e-43361351100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+ae+a
  XP_023525656.1  36 PCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVA 130
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023525656.1 131 KTHAE 135
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MDAKSSPTSN IFRSQSPSSS PLPPPPSVQA GLVVSPCAAC KTLRRRCTEK CVLAPYFPPS  60
DPLKFTIAHR IFGASNIIKL LQDLPESQRA DAVSSLVYEA SARIRDPVYG CAGAICHLQK  120
QINELQAEVA KTHAELVNMQ CHQANLVALI CKELTQTPAP TPPPPDHCSL DNNFSSATPQ  180
SYPLFDDSNI WEALWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-66LBD family protein