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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_023525725.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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| Family | bHLH | ||||||||
| Protein Properties | Length: 228aa MW: 25282.8 Da PI: 7.1947 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 25.1 | 3.2e-08 | 153 | 194 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ r+RR++i +++ L++l+P K++ a++L +A Y+k L
XP_023525725.1 153 AARKRREKISEKIRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 194
67*******************95.....5****************98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 228 aa Download sequence |
MDDLLWNGSW NNGEDDGCKE SLLFSDGSSR CSSPLLQELQ TVARILGLSE IETPTPEMRA 60 VELAVDPKSW PAGASSGGLL LEELENDKGI GVSPSSSNNY ETESSDRDQI MSRMKEMIYH 120 AAVFRPVNLG IETVEKKKKR RNVKMSKELQ TVAARKRREK ISEKIRVLQR LVPGGSKMDT 180 ASMLDEAASY LKFLRAQIKA LEGNGYKLGS NCTSFNPTIF PSNAYFPL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 141 | KKKKRR |
| 2 | 136 | 158 | KKKKRRNVKMSKELQTVAARKRR |
| 3 | 136 | 160 | KKKKRRNVKMSKELQTVAARKRREK |
| 4 | 137 | 142 | KKKKRR |
| 5 | 137 | 159 | KKKKRRNVKMSKELQTVAARKRR |
| 6 | 137 | 161 | KKKKRRNVKMSKELQTVAARKRREK |
| 7 | 138 | 160 | KKKKRRNVKMSKELQTVAARKRR |
| 8 | 138 | 162 | KKKKRRNVKMSKELQTVAARKRREK |
| 9 | 139 | 161 | KKKKRRNVKMSKELQTVAARKRR |
| 10 | 155 | 160 | RKRREK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G21330.1 | 1e-27 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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