PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525767.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 936aa    MW: 103189 Da    PI: 5.2654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.7e-25149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_023525767.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_023525767.1 240 KSQLLVGVRRA 250
                     7778*****97 PP
2Auxin_resp113.52e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_023525767.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    
MGSVDEKLKT IGGFITHAPQ TNLLDDMKLL KEMQDQTGAR KAINSELWHA CAGPLVSLPH  60
MGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVHNVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFIVPDFGLR QSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLVGVRRA NRQQSMLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWDIET PESLFIFPSL TSGLKRPLHG GFLAGETDWG SLVKRPMLRV  420
PENVSYASTL CSEPLMKMLL RPQLVNLHGT TLQQQDMMGV MQPVTNPKIQ QQVTPSSQHQ  480
NHHQPAPSPS TDPINSNSSP KANEPGKVQD PAAIESEAPT GAEADKSKYE REVSTCQSNP  540
LPPVDCGEDK LTGNEVNMQT LVNQLSFVNQ NQIPMQLQSV SSWPMQPQLE SLIQHPQPID  600
MPQPEFPNSN GLISSMDGDG CLINPTCLPL SGVMRSPGNL SMLGLQDSST VFSEALNFPI  660
PSTGQEMWDP LSNIRFSSQN NHLVSFSHPD ASNLNCMANA NVTRDVSDES NNQSGIYGCS  720
NLEISNGGNT LVDPAVSSTI LDDYCTLKDA DFPHPSDCLA GNFSSSQDVQ SQITSASLGD  780
SQAFSRQEFH DNSGGTSSCN VDFDEGNLLQ NGSWKQVVPP MRTYTKVQKA GSVGRSIDVT  840
SFKNYEELCS AIECMFGLEG LLNDPRGSGW KLVYVDYEND VLLIGDDPWE EFVSCVRCIR  900
ILSPSEVQQM SEEGMKLLNS AMMQGMNCSI SEGGRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein