PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525768.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 935aa    MW: 103118 Da    PI: 5.2654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.7e-25149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_023525768.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_023525768.1 240 KSQLLVGVRRA 250
                     7778*****97 PP
2Auxin_resp113.51.9e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_023525768.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    
MGSVDEKLKT IGGFITHAPQ TNLLDDMKLL KEMQDQTGAR KAINSELWHA CAGPLVSLPH  60
MGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVHNVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFIVPDFGLR QSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLVGVRRA NRQQSMLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWDIET PESLFIFPSL TSGLKRPLHG GFLGETDWGS LVKRPMLRVP  420
ENVSYASTLC SEPLMKMLLR PQLVNLHGTT LQQQDMMGVM QPVTNPKIQQ QVTPSSQHQN  480
HHQPAPSPST DPINSNSSPK ANEPGKVQDP AAIESEAPTG AEADKSKYER EVSTCQSNPL  540
PPVDCGEDKL TGNEVNMQTL VNQLSFVNQN QIPMQLQSVS SWPMQPQLES LIQHPQPIDM  600
PQPEFPNSNG LISSMDGDGC LINPTCLPLS GVMRSPGNLS MLGLQDSSTV FSEALNFPIP  660
STGQEMWDPL SNIRFSSQNN HLVSFSHPDA SNLNCMANAN VTRDVSDESN NQSGIYGCSN  720
LEISNGGNTL VDPAVSSTIL DDYCTLKDAD FPHPSDCLAG NFSSSQDVQS QITSASLGDS  780
QAFSRQEFHD NSGGTSSCNV DFDEGNLLQN GSWKQVVPPM RTYTKVQKAG SVGRSIDVTS  840
FKNYEELCSA IECMFGLEGL LNDPRGSGWK LVYVDYENDV LLIGDDPWEE FVSCVRCIRI  900
LSPSEVQQMS EEGMKLLNSA MMQGMNCSIS EGGRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein