PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525769.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 931aa    MW: 102744 Da    PI: 5.2654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.6e-25149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_023525769.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_023525769.1 240 KSQLLVGVRRA 250
                     7778*****97 PP
2Auxin_resp113.51.9e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_023525769.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    
MGSVDEKLKT IGGFITHAPQ TNLLDDMKLL KEMQDQTGAR KAINSELWHA CAGPLVSLPH  60
MGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVHNVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFIVPDFGLR QSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLVGVRRA NRQQSMLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWDIET PESLFIFPSL TSGLKRPLHG ETDWGSLVKR PMLRVPENVS  420
YASTLCSEPL MKMLLRPQLV NLHGTTLQQQ DMMGVMQPVT NPKIQQQVTP SSQHQNHHQP  480
APSPSTDPIN SNSSPKANEP GKVQDPAAIE SEAPTGAEAD KSKYEREVST CQSNPLPPVD  540
CGEDKLTGNE VNMQTLVNQL SFVNQNQIPM QLQSVSSWPM QPQLESLIQH PQPIDMPQPE  600
FPNSNGLISS MDGDGCLINP TCLPLSGVMR SPGNLSMLGL QDSSTVFSEA LNFPIPSTGQ  660
EMWDPLSNIR FSSQNNHLVS FSHPDASNLN CMANANVTRD VSDESNNQSG IYGCSNLEIS  720
NGGNTLVDPA VSSTILDDYC TLKDADFPHP SDCLAGNFSS SQDVQSQITS ASLGDSQAFS  780
RQEFHDNSGG TSSCNVDFDE GNLLQNGSWK QVVPPMRTYT KVQKAGSVGR SIDVTSFKNY  840
EELCSAIECM FGLEGLLNDP RGSGWKLVYV DYENDVLLIG DDPWEEFVSC VRCIRILSPS  900
EVQQMSEEGM KLLNSAMMQG MNCSISEGGR A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein