PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525825.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 313aa    MW: 35562.9 Da    PI: 5.1199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_023525825.1 20 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding50.93.7e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el+v+++ + G++ W+ Ia++++ gRt++++k++w++ 
   XP_023525825.1  73 RGAFSPQEEELIVHLHSLIGNR-WSQIASRLP-GRTDNEIKNFWNST 117
                      89********************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MRKPEAGLGK ENVEKNKYRK GLWSPEEDEK LMRYMLSNGQ GCWSDIARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAFSPQE EELIVHLHSL IGNRWSQIAS RLPGRTDNEI KNFWNSTLKK  120
RLKNNLSSTP FSNHESSDPR LDMMFGGIMA MQEHDIMSMN MSMDSSSTSS SSSQLPFSAT  180
GHNSFDGSSI PFLDNNFEMA SMVGATNGFL QAPGGCATEM GMRMIMEERL SYGSLEAQRS  240
MELEREVLCL PHEEMNNRSN FDEYLGTNDQ NLNVEEMFGD MGSHGQVQES LKMGNEWDVE  300
SFMQDISSFP HFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-72MYB family protein