PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525961.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26983.8 Da    PI: 9.7466
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  XP_023525961.1  9 KRIENPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSSTGKLHEYIS 59
                    79***********************************************86 PP
2K-box92.19.4e-3171169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l+ ++ +++q++l+kLk+ ++nL+r++R+++Ge +++Ls++eL+ Leq+++++++ iR++K++++ +qie+ +kk k++ e++k+L 
  XP_023525961.1  71 YQKTLGVDLWISHFQRMQENLKKLKDVNRNLRRQIRQRMGEYMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKTLL 165
                     7899999***************************************************************************************9 PP

           K-box  96 kkle 99 
                     ++++
  XP_023525961.1 166 QEFD 169
                     9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MARGKIQIKR IENPTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFSS TGKLHEYISP  60
STSTKELFDH YQKTLGVDLW ISHFQRMQEN LKKLKDVNRN LRRQIRQRMG EYMNDLSFEE  120
LRCLEQDMDN AVRIIRERKY RVISNQIETH KKKLKSVGEI HKTLLQEFDI ATGEEPHYGL  180
VDDEGVGGDY DSMMRYSGGG GPRIFALRLH PNHPNMHHAH PSDLTTYPLL E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-88MIKC_MADS family protein