PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023526254.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 274aa    MW: 30434.4 Da    PI: 8.407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023526254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +++ +v  +G g+W++++++ g++R++k+c++rw +yl
   XP_023526254.1 14 RGLWTAEEDAKILAYVSNHGVGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding48.22.4e-1569110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E++l++++++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_023526254.1  69 SFTPQEEDLIIKLHQAIGSR-WSVIAKQLP-GRTDNDVKNYWNT 110
                      79******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGKPPCCDKS NVKRGLWTAE EDAKILAYVS NHGVGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRPDLRHDSF TPQEEDLIIK LHQAIGSRWS VIAKQLPGRT DNDVKNYWNT KLRKKLSKMG  120
IDPITHKPFS QILFDYGSIS SLPATPKPPL IGPFNKTLIP TTTTMAKTQQ PFSSGAYLGQ  180
QFQFQTPKKP QFFNEQPTTS SCSSSSINGG EGLFHFAASS SCCSEQRNGI EPFSQQCEGS  240
SSDSSFDSFV DALLVQDCEI KGSFPEILDG CFDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.18e-79MYB family protein