PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526283.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 242aa MW: 26038.8 Da PI: 8.1557

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.7	4.7e-39	35	134	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l++el XP_023526283.1 35 PCGACKFLRRKCTPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEL 129 7*********************9988***************************************************************** PP DUF260 95 allke 99 a+l++ XP_023526283.1 130 AYLQA 134 *9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MKERQESKAE MSSRHGGGGC KEGNGGSSSN GSGGPCGACK FLRRKCTPEC IFAPYFDSEQ 60 GTTHFAAVHK VFGASNVSKL LLHIPEHKRL DAAITICYEA QARVREPVFG CVAHIFALQQ 120 QAARLQVELA YLQAYLAASE LSRTAPHPQA QPQDLVKPTI PSIVSLPLDC SSLPSAASDL 180 SLLIDPVEQA SPAKLQSPLE FCQIRSNNFP SMGSIDQQIV QKQLSTMQRI GASLFPYVPK 240 GA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	7e-58	LBD family protein