PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023526286.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32395.2 Da    PI: 4.7208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023526286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-2169122356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ F +++++  e++ +LAkklgL+ rqV vWFqNrRa++k
  XP_023526286.1  69 KKRRLTHDQVQMLEKSFDEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 122
                     56789************************************************9 PP
2HD-ZIP_I/II131.92.5e-4268160193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+++qv++LE+sF+ee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd l ++ +++ ke+++L++++++
  XP_023526286.1  68 EKKRRLTHDQVQMLEKSFDEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLLSNYDSVIKENADLKSQVTS 160
                     69**************************************************************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MESGRFLFNP PPCGGNMLYL GGAGSDPVLR GGRTMISMTM HESPKGRPFF RSPDDLYDDE  60
YYDEFYPEKK RRLTHDQVQM LEKSFDEENK LEPERKSQLA KKLGLQPRQV AVWFQNRRAR  120
WKTKQLERDY DVLKASYDLL LSNYDSVIKE NADLKSQVTS LTEKFLAKEL DGGGEAPIPC  180
VTSEPLLADI GHVSAPHSSR KAEDRLSSGS DGSTVIDDNC RQLIDCCDSY FPSNEYLQCA  240
PLPNGLQMEH DDSNNNSNYL FSDMFAVTGQ QNQEGMGGPP AWWTWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-86HD-ZIP family protein