PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526354.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 346aa MW: 38162.2 Da PI: 7.0178

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W+++++ g+ R++k+c++rw +yl XP_023526354.1 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.4	4.4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023526354.1 67 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKLISHE 120 VSALTTFSGH LQNPNVSINN EGFFILNANP NLILTTSAHQ DQPCLPTSTL QAGYDLIDYK 180 LQQFSNLNPN ANLVHLLPSF SPSTNLLPHN PPSWQSLGGY RSQSLDSDQL MVASGEFVTP 240 MTTLPQYVDG SILHPAKLCE VGEENICSSV PQISAPSQDL DPFTKLSSFP NGYYPQDQCL 300 AANQMAMEQI DMIMSSILQI PSCSSSSALL GLSELSSNLV SSSWGV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKLISHE  120
VSALTTFSGH LQNPNVSINN EGFFILNANP NLILTTSAHQ DQPCLPTSTL QAGYDLIDYK  180
LQQFSNLNPN ANLVHLLPSF SPSTNLLPHN PPSWQSLGGY RSQSLDSDQL MVASGEFVTP  240
MTTLPQYVDG SILHPAKLCE VGEENICSSV PQISAPSQDL DPFTKLSSFP NGYYPQDQCL  300
AANQMAMEQI DMIMSSILQI PSCSSSSALL GLSELSSNLV SSSWGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-79	MYB family protein