PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526357.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 295aa MW: 32518.1 Da PI: 8.4788

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W+++++ g+ R++k+c++rw +yl XP_023526357.1 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.7	3.5e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023526357.1 67 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKLISHE 120 VSALTTFSGH LQNPNVSINN EGFFILNANP NLILTTSAHQ DQPCLPTSTL QAGYDLIDYK 180 LQQFSNLNPN ANLVHLLPSF SPSTNLLPHN PPSWQSLGGY RSQSLDSDQL MVASGEFVTP 240 MTTLPQYVDG SILHPAKLCE VDPVVLVVVG IVGSIGIIEQ SSFVKLGSVG YIGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	3e-80	MYB family protein