PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526488.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 522aa MW: 59194.1 Da PI: 6.7638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92	6e-29	110	195	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+ ++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_023526488.1 110 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMaEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 195 8***********************************889*************************97..66678*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MEMDDQYALS DLRHLMTTPP SRSHFPSSSS IPHHDLFSSS STSSPAAAFR HHHHHHHTPY 60 DLIMMMPRDP LPDFRSDSTA TPPAVVSAPT APTAFELETA SLAADCATPR WPRQETLTLL 120 DIRSRLDSKF KEANQKGPLW DEVSRIMAEE HNYQRSGKKC REKFENLYKY YKKTKEGKAG 180 RQDGKNYRFF RQLEALYGET TNSAQLPDSH FVGDSNLSFQ QNGTNNPTTA LPMSYEAQQK 240 HYCDSLSLSN TSEFETSASS DDNDDLGSVG IMDNDSVEKR RKRRGGKCWK AKIKQFIDSQ 300 MRKLIDKQEA WLEKLMKTLE QKEKDRMIRE EEWRRQEVSR MDRERSFWAK ERAWIEARDA 360 ALMEALQRLT GRELRDYNSS PDHGLIAPER HRNNSDNQNE DGSEILNNNT GRELVDNNNY 420 QRKTIDEGNK KRKENSRSAT TYNLYFQTDS SLYSGGGPCG GGAEIKEQSP NSSNAGGGGG 480 GGSGSHVVQD SCFRFLMGEG DQSQSGLWEN FGLKLNNGSD QS

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MEMDDQYALS DLRHLMTTPP SRSHFPSSSS IPHHDLFSSS STSSPAAAFR HHHHHHHTPY  60
DLIMMMPRDP LPDFRSDSTA TPPAVVSAPT APTAFELETA SLAADCATPR WPRQETLTLL  120
DIRSRLDSKF KEANQKGPLW DEVSRIMAEE HNYQRSGKKC REKFENLYKY YKKTKEGKAG  180
RQDGKNYRFF RQLEALYGET TNSAQLPDSH FVGDSNLSFQ QNGTNNPTTA LPMSYEAQQK  240
HYCDSLSLSN TSEFETSASS DDNDDLGSVG IMDNDSVEKR RKRRGGKCWK AKIKQFIDSQ  300
MRKLIDKQEA WLEKLMKTLE QKEKDRMIRE EEWRRQEVSR MDRERSFWAK ERAWIEARDA  360
ALMEALQRLT GRELRDYNSS PDHGLIAPER HRNNSDNQNE DGSEILNNNT GRELVDNNNY  420
QRKTIDEGNK KRKENSRSAT TYNLYFQTDS SLYSGGGPCG GGAEIKEQSP NSSNAGGGGG  480
GGSGSHVVQD SCFRFLMGEG DQSQSGLWEN FGLKLNNGSD QS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	307	KRRKRRGGKCWKAKIKQFIDSQMRKLIDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-99	Trihelix family protein