PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526590.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 28493.3 Da PI: 8.8759

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.6	9.3e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss XP_023526590.1 9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59 79***********************************************96 PP
2	K-box	102.4	6.1e-34	84	175	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ ++s++qe+ kL +++e q+++Rh+lGe+L++L+l+eLq+LeqqL++slk+iR++Kn+l+ e+i++l kkekelqeen++L +k++e XP_023526590.1 84 SDSESQASWCQEYPKLAARLEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISKLHKKEKELQEENRKLANKVKE 175 45566789*********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRGRVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSH 60 SSMEKILEKY ERYSYAERPL APNSDSESQA SWCQEYPKLA ARLEIVQKNL RHYLGEELDP 120 LNLRELQSLE QQLDSSLKRI RARKNQLMQE SISKLHKKEK ELQEENRKLA NKVKENETVW 180 VERGHCELTN LDHNHHILAT PPPLPSLSIG VNCHGRGSDE DETRPTSTNN IQIPAWMLSH 240 VTENPHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	5e-69	MIKC_MADS family protein