PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526608.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24573.1 Da PI: 9.9483

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.1	2.6e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdae a+iifsstgklye++s XP_023526608.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSTGKLYEFAS 59 8***********************************************86 PP
2	K-box	80.9	3e-27	83	171	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ + q+e++ L +eie+L+ ++R+llGe+L+s s++eLqq+e+qLe+sl +++++K+e+++eqie+l++kek l en +L kk XP_023526608.1 83 SHQHDLQPVQNEATSLLDEIESLEVSKRKLLGEGLGSSSYEELQQIEKQLERSLAHVKARKYEVYKEQIEQLKEKEKYLAAENAKLAKK 171 56778899******************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MVRGKTEMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AELALIIFSS TGKLYEFASS 60 SLQATVGRYL RHTKATHRLQ PPSHQHDLQP VQNEATSLLD EIESLEVSKR KLLGEGLGSS 120 SYEELQQIEK QLERSLAHVK ARKYEVYKEQ IEQLKEKEKY LAAENAKLAK KCFVQRELRQ 180 SSTQVGKIST HLEHSSIFDV ETELFIGPPK SRSIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-69	MIKC_MADS family protein