PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526676.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 222aa MW: 25003.7 Da PI: 9.8344

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEdell ++++ G g+W++ ++ g+ R++k+c++rw +yl XP_023526676.1 14 KGRWTAEEDELLTNYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.1e-15	67	117	1	48
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++ +v++++ lG+ +W+ Ia +++ gRt++++k++w+++l XP_023526676.1 67 RGNITAEEEQMIVKLHNVLGNSlfrfRWSVIAGHLP-GRTDNEIKNYWNSHL 117 7999***************9**********.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MGRSPCCEKV GLRKGRWTAE EDELLTNYIR ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTNLKRGNI TAEEEQMIVK LHNVLGNSLF RFRWSVIAGH LPGRTDNEIK NYWNSHLSRR 120 IYTVTRPSAT KSSSPITCLL GIIPVPKRKR DVTCGRREEQ GGIVKGKEED DGKTLGKEVI 180 LRSIMGDGDG EGLGPYEWLD GEIMTLNNGM VKACGKWESM HG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	8e-75	MYB family protein