PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023526784.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 246aa    MW: 28216.9 Da    PI: 8.7714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023526784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd++l+ ++k++G  +W++ ++  g+ R++k+c++rw +yl
   XP_023526784.1 14 KGPWTTEEDQILISYIKKHGHSNWRALPKLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding47.15.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+   + ++++lG++ W++Ia++++ gRt++++k++w+++l
   XP_023526784.1  67 RGNFTLQEQNMVLLLHEKLGNR-WSAIAAELP-GRTDNEIKNFWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MVRAPCCEKM GLKKGPWTTE EDQILISYIK KHGHSNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPGVKRGNF TLQEQNMVLL LHEKLGNRWS AIAAELPGRT DNEIKNFWHT HLKKRVVYKQ  120
SYVYEKKSAD SAIVEAKSKS QKLDFSNHYE LPSSSFYPSP LTNSPTGCNE FQSEQHIEIF  180
EAFHQTCGGR WPVEPSTANF NGAFNSSTVN DEERDQWPSF RAMDDSMEFW YSVFVKAGGS  240
PTDPAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-69MYB family protein