PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526808.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 969aa MW: 106361 Da PI: 5.2866

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.2e-29	590	641	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_023526808.1 590 AEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 641 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence
MENPFPSKEE GMGYWGPSRT QADALTFTDA GMRIPSPEDV LHSFSELMSF DSYAGWGNNC 60 AVMDPVFTSC GISSIPPTST CPSMEGSTFP EGGSHEILPL NELGGASISM ANSFTCGDEV 120 TFQQPDTEFG VSDVSDNTNE SGSNSNNVQD MDSCLISRPI SWSLDERMLR ALSLFKESSP 180 GGILAQVWVP MKHGNQFYLS TTDQPYLLDQ MLTGYREVSR WYTFSAEGKL GSLLGLPGRV 240 FNSKIPEWTS NVRYYSENEY LRMEHAIGHE VYGSIALPIF SNELERSCCA VLEVVTTKEK 300 PNFDAEIDIV SRALEIVSLR TIAPPRLYPQ CLKQNQRSVL AEITDVLRAV CHAHRLPLAL 360 TWIPCCYTLQ AVDEAARVRV KENDVSPKGK SVLCIEETAC YVNDKATQGF VHACMEHHLE 420 EGQGIVGKAL QSNHPFFYPD VKAYNINEYP LVHHARKFGL NAAVAIRLRS TYTGADDYIL 480 EFFLPVNMKG SSEQQLLLNN LSGTMQRMCR SLRTVSKDEL LGAKDPDAGF QSGMAGKSAT 540 TSRRNSQSTV TDSETRVSNS INDGTKAECP KKQQTTNGTR RQADKKRSTA EKNVSFSVLQ 600 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI LRWPSRKINK VNRSLGKIQT VLDSVKGVEC 660 RLKFDPTTGG LMAAGSLIPE LNGQNSPLFS DNNPSIINLE PLPRDVNSVP PIPFDSQNPA 720 VKLEMDDQRN SSRSVLIPEK EPSVCQLDCG EGSKSTGLDA ASCQLSGLDV MDWDVPGNAA 780 GCITAKKGNG LDFVENNLRS CSFGAANGVG TMWEGSDGMN EHYQPTTSSM TDSSNSSGLL 840 IHGSSSSGQS VEERKHLQEK TSCVDSDSKI VVKASYKEDT VRFKFDPSLG YLQLYEEVGK 900 RFKLNQGTFQ LKYLDDEKEW VMLVSNSDMQ ECLEVMDEIG TRNVKFLVRD ITCAVGSSGS 960 SSCYLSGGS

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence

MENPFPSKEE GMGYWGPSRT QADALTFTDA GMRIPSPEDV LHSFSELMSF DSYAGWGNNC  60
AVMDPVFTSC GISSIPPTST CPSMEGSTFP EGGSHEILPL NELGGASISM ANSFTCGDEV  120
TFQQPDTEFG VSDVSDNTNE SGSNSNNVQD MDSCLISRPI SWSLDERMLR ALSLFKESSP  180
GGILAQVWVP MKHGNQFYLS TTDQPYLLDQ MLTGYREVSR WYTFSAEGKL GSLLGLPGRV  240
FNSKIPEWTS NVRYYSENEY LRMEHAIGHE VYGSIALPIF SNELERSCCA VLEVVTTKEK  300
PNFDAEIDIV SRALEIVSLR TIAPPRLYPQ CLKQNQRSVL AEITDVLRAV CHAHRLPLAL  360
TWIPCCYTLQ AVDEAARVRV KENDVSPKGK SVLCIEETAC YVNDKATQGF VHACMEHHLE  420
EGQGIVGKAL QSNHPFFYPD VKAYNINEYP LVHHARKFGL NAAVAIRLRS TYTGADDYIL  480
EFFLPVNMKG SSEQQLLLNN LSGTMQRMCR SLRTVSKDEL LGAKDPDAGF QSGMAGKSAT  540
TSRRNSQSTV TDSETRVSNS INDGTKAECP KKQQTTNGTR RQADKKRSTA EKNVSFSVLQ  600
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI LRWPSRKINK VNRSLGKIQT VLDSVKGVEC  660
RLKFDPTTGG LMAAGSLIPE LNGQNSPLFS DNNPSIINLE PLPRDVNSVP PIPFDSQNPA  720
VKLEMDDQRN SSRSVLIPEK EPSVCQLDCG EGSKSTGLDA ASCQLSGLDV MDWDVPGNAA  780
GCITAKKGNG LDFVENNLRS CSFGAANGVG TMWEGSDGMN EHYQPTTSSM TDSSNSSGLL  840
IHGSSSSGQS VEERKHLQEK TSCVDSDSKI VVKASYKEDT VRFKFDPSLG YLQLYEEVGK  900
RFKLNQGTFQ LKYLDDEKEW VMLVSNSDMQ ECLEVMDEIG TRNVKFLVRD ITCAVGSSGS  960
SSCYLSGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein