PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526811.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 923aa MW: 101164 Da PI: 5.6972

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.1e-29	544	595	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_023526811.1 544 AEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 595 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence
MATNLSISGW GNNCAVMDPV FTSCGISSIP PTSTCPSMEG STFPEGGSHE ILPLNELGGA 60 SISMANSFTC GDEVTFQQPD TEFGVSDVSD NTNESGSNSN NVQDMDSCLI SRPISWSLDE 120 RMLRALSLFK ESSPGGILAQ VWVPMKHGNQ FYLSTTDQPY LLDQMLTGYR EVSRWYTFSA 180 EGKLGSLLGL PGRVFNSKIP EWTSNVRYYS ENEYLRMEHA IGHEVYGSIA LPIFSNELER 240 SCCAVLEVVT TKEKPNFDAE IDIVSRALEI VSLRTIAPPR LYPQCLKQNQ RSVLAEITDV 300 LRAVCHAHRL PLALTWIPCC YTLQAVDEAA RVRVKENDVS PKGKSVLCIE ETACYVNDKA 360 TQGFVHACME HHLEEGQGIV GKALQSNHPF FYPDVKAYNI NEYPLVHHAR KFGLNAAVAI 420 RLRSTYTGAD DYILEFFLPV NMKGSSEQQL LLNNLSGTMQ RMCRSLRTVS KDELLGAKDP 480 DAGFQSGMAG KSATTSRRNS QSTVTDSETR VSNSINDGTK AECPKKQQTT NGTRRQADKK 540 RSTAEKNVSF SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QHGILRWPSR KINKVNRSLG 600 KIQTVLDSVK GVECRLKFDP TTGGLMAAGS LIPELNGQNS PLFSDNNPSI INLEPLPRDV 660 NSVPPIPFDS QNPAVKLEMD DQRNSSRSVL IPEKEPSVCQ LDCGEGSKST GLDAASCQLS 720 GLDVMDWDVP GNAAGCITAK KGNGLDFVEN NLRSCSFGAA NGVGTMWEGS DGMNEHYQPT 780 TSSMTDSSNS SGLLIHGSSS SGQSVEERKH LQEKTSCVDS DSKIVVKASY KEDTVRFKFD 840 PSLGYLQLYE EVGKRFKLNQ GTFQLKYLDD EKEWVMLVSN SDMQECLEVM DEIGTRNVKF 900 LVRDITCAVG SSGSSSCYLS GGS

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence

MATNLSISGW GNNCAVMDPV FTSCGISSIP PTSTCPSMEG STFPEGGSHE ILPLNELGGA  60
SISMANSFTC GDEVTFQQPD TEFGVSDVSD NTNESGSNSN NVQDMDSCLI SRPISWSLDE  120
RMLRALSLFK ESSPGGILAQ VWVPMKHGNQ FYLSTTDQPY LLDQMLTGYR EVSRWYTFSA  180
EGKLGSLLGL PGRVFNSKIP EWTSNVRYYS ENEYLRMEHA IGHEVYGSIA LPIFSNELER  240
SCCAVLEVVT TKEKPNFDAE IDIVSRALEI VSLRTIAPPR LYPQCLKQNQ RSVLAEITDV  300
LRAVCHAHRL PLALTWIPCC YTLQAVDEAA RVRVKENDVS PKGKSVLCIE ETACYVNDKA  360
TQGFVHACME HHLEEGQGIV GKALQSNHPF FYPDVKAYNI NEYPLVHHAR KFGLNAAVAI  420
RLRSTYTGAD DYILEFFLPV NMKGSSEQQL LLNNLSGTMQ RMCRSLRTVS KDELLGAKDP  480
DAGFQSGMAG KSATTSRRNS QSTVTDSETR VSNSINDGTK AECPKKQQTT NGTRRQADKK  540
RSTAEKNVSF SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QHGILRWPSR KINKVNRSLG  600
KIQTVLDSVK GVECRLKFDP TTGGLMAAGS LIPELNGQNS PLFSDNNPSI INLEPLPRDV  660
NSVPPIPFDS QNPAVKLEMD DQRNSSRSVL IPEKEPSVCQ LDCGEGSKST GLDAASCQLS  720
GLDVMDWDVP GNAAGCITAK KGNGLDFVEN NLRSCSFGAA NGVGTMWEGS DGMNEHYQPT  780
TSSMTDSSNS SGLLIHGSSS SGQSVEERKH LQEKTSCVDS DSKIVVKASY KEDTVRFKFD  840
PSLGYLQLYE EVGKRFKLNQ GTFQLKYLDD EKEWVMLVSN SDMQECLEVM DEIGTRNVKF  900
LVRDITCAVG SSGSSSCYLS GGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein