PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526833.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 315aa MW: 36084.2 Da PI: 8.2937

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.3e-06	22	42	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg F+ + +Lk+H+++H XP_023526833.1 22 CQECGAEFRKPAYLKQHMQSH 42 *******************99 PP
2	zf-C2H2	15	6.9e-05	48	72	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ C s++rk++L+rH+ H XP_023526833.1 48 YICSidGCEASYRRKDHLTRHLLHH 72 899999***************9987 PP
3	zf-C2H2	21.4	6.5e-07	115	139	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s+L++H +H XP_023526833.1 115 FVCPedGCGKVFRYASQLQKHEHSH 139 89*******************9888 PP
4	zf-C2H2	19.7	2.3e-06	208	231	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C+k+Fs+ snL++H+++ H XP_023526833.1 208 CTheGCSKVFSTISNLHQHMKVvH 231 88889****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MESGKHNDEG GDKTKNGKSN ICQECGAEFR KPAYLKQHMQ SHSLERPYIC SIDGCEASYR 60 RKDHLTRHLL HHQGLIIKCP IEGCSREFAY ISCVNRHLKE CHEGGAPPEE CQKQFVCPED 120 GCGKVFRYAS QLQKHEHSHF KLDSIEACCA EPGCMKTFTN KKCLQAHMQS CHQYINCEIC 180 GEKKLRKNMK QHLRQKHESQ GSPEAIPCTH EGCSKVFSTI SNLHQHMKVV HLGEKPFACG 240 FPGCGMRFGY KHVRDNHEKK GQHVYTNGDF EAADEQFRSK PRGGRKRIRP TVEMLIRKRI 300 TPPSELDFIM IDEEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-121	C2H2 family protein