PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526840.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 272aa MW: 31312 Da PI: 8.3505

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	5	29	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ C s++rk++L+rH+ H XP_023526840.1 5 YICSidGCEASYRRKDHLTRHLLHH 29 899999***************9987 PP
2	zf-C2H2	21.7	5.3e-07	72	96	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s+L++H +H XP_023526840.1 72 FVCPedGCGKVFRYASQLQKHEHSH 96 89*******************9888 PP
3	zf-C2H2	20	1.9e-06	165	188	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C+k+Fs+ snL++H+++ H XP_023526840.1 165 CTheGCSKVFSTISNLHQHMKVvH 188 88889****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MQRPYICSID GCEASYRRKD HLTRHLLHHQ GLIIKCPIEG CSREFAYISC VNRHLKECHE 60 GGAPPEECQK QFVCPEDGCG KVFRYASQLQ KHEHSHFKLD SIEACCAEPG CMKTFTNKKC 120 LQAHMQSCHQ YINCEICGEK KLRKNMKQHL RQKHESQGSP EAIPCTHEGC SKVFSTISNL 180 HQHMKVVHLG EKPFACGFPG CGMRFGYKHV RDNHEKKGQH VYTNGDFEAA DEQFRSKPRG 240 GRKRIRPTVE MLIRKRITPP SELDFIMIDE EC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-104	C2H2 family protein