PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023526888.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 329aa    MW: 36233.2 Da    PI: 7.1888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023526888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-155093146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++++E  l+v+++  lG++ W+ Ia+ ++ gRt++++k++w++
   XP_023526888.1 50 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 93
                     899*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MQEGFGHPRK TRSLSITFLL TIITKLAGLQ RCGKSCRLRW INYLRPDLKR GSFSPQEAAL  60
IVQLHSILGN RWAQIAKQLP GRTDNEVKNF WNSNIKKKLI SHEVSALTTF SGHLQNPNVS  120
INNEGFFILN ANPNLILTTS AHQDQPCLPT STLQAGYDLI DYKLQQFSNL NPNANLVHLL  180
PSFSPSTNLL PHNPPSWQSL GGYRSQSLDS DQLMVASGEF VTPMTTLPQY VDGSILHPAK  240
LCEVGEENIC SSVPQISAPS QDLDPFTKLS SFPNGYYPQD QCLAANQMAM EQIDMIMSSI  300
LQIPSCSSSS SLLGLSELSS NLVSSSWGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-46MYB family protein