PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526889.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 536aa MW: 59400.1 Da PI: 8.074

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	8.1e-15	50	93	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023526889.1 50 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 93 899*****************.*****.*********96 PP
2	Myb_DNA-binding	46.6	8.1e-15	292	335	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023526889.1 292 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 335 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MLEGFGHPRK TRSLSITFLL TIITKLAGLQ RCGKSCRLRW INYLRPDLKR GSFSPQEAAL 60 IVQLHSILGN RWAQIAKQLP GRTDNEVKNF WNSNIKKKLI SHEVSALTTF SGHLQNPNVS 120 INNEGFFILN ANPNLILTTS AHQDQPCLPT STLQAGYDLI DYKLQQFSNL NPNANLVHLL 180 PSFSPSTNLL PHNPPSWQSL GGYRSQSLDS DQLMVASGEF VTPMTTLPQY VDGSILHPAK 240 LCEVGEENIC SSVPQISAPS QDXIITKLAG LQRCGKSCRL RWINYLRPDL KRGSFSPQEA 300 ALIVQLHSIL GNRWAQIAKQ LPGRTDNEVK NFWNSNIKKK LISHEVSALT TFSGHLQNPN 360 VSINNEGFFI LNANPNLILT TSAHQDQPCL PTSTLQAGYD LIDYKLQQFS NLNPNANLVH 420 LLPSFSPSTN LLPHNPPSWQ SLGGYRSQSL DSDQLMVASG EFVTPMTTLP QYVDGSILHP 480 AKLCEVGEEN ICSSVPQISA PSQDLDPFTK LSSFPNGYYP QDQCLAANQM AMXYVL

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MLEGFGHPRK TRSLSITFLL TIITKLAGLQ RCGKSCRLRW INYLRPDLKR GSFSPQEAAL  60
IVQLHSILGN RWAQIAKQLP GRTDNEVKNF WNSNIKKKLI SHEVSALTTF SGHLQNPNVS  120
INNEGFFILN ANPNLILTTS AHQDQPCLPT STLQAGYDLI DYKLQQFSNL NPNANLVHLL  180
PSFSPSTNLL PHNPPSWQSL GGYRSQSLDS DQLMVASGEF VTPMTTLPQY VDGSILHPAK  240
LCEVGEENIC SSVPQISAPS QDXIITKLAG LQRCGKSCRL RWINYLRPDL KRGSFSPQEA  300
ALIVQLHSIL GNRWAQIAKQ LPGRTDNEVK NFWNSNIKKK LISHEVSALT TFSGHLQNPN  360
VSINNEGFFI LNANPNLILT TSAHQDQPCL PTSTLQAGYD LIDYKLQQFS NLNPNANLVH  420
LLPSFSPSTN LLPHNPPSWQ SLGGYRSQSL DSDQLMVASG EFVTPMTTLP QYVDGSILHP  480
AKLCEVGEEN ICSSVPQISA PSQDLDPFTK LSSFPNGYYP QDQCLAANQM AMXYVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-44	MYB family protein