PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527076.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 536aa MW: 58324.2 Da PI: 5.3465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	345	387	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_023527076.1 345 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 387 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MLPKSTGILW LDGDHHDGAS WNRTNNHNND DIAVAGSASS FKSMLQSDWY MNSTTPLNPS 60 NQDFHSLSSH PDVRDLPFNS NPPDNLLLRP IDSSSACSAS QAFAMDPSHS QSMLPPQKSC 120 FPSLFNVACS SNFENGFDLG GENGLLGSYQ GNQVSNSSGM MGFNGISSLP QIGNQELSLN 180 NAEFPVADNP PAFGAGFNPT DAFESFDGCG NALFQNRSKA LRPPESFPQV GGTQPTLFQK 240 RAAHRVGSSG VDKLENLEVS GSKFGDGSMW MPNMERLMKN SDEDIEDDSL DISRLNYDSD 300 EANEYNKLED NVNAKNSGSN SNANTTVTDG NQKGKRKGMP AKNLMAERRR RKKLNDRLYM 360 LRSVVPKISK MDRASILGDA IDYLKELLQK INELHNELES TPPPPGSSLQ PPASIHPLTP 420 TLPIPTLPNL PCRVKEELCP SSMSSPKAQP ARVEVRAREG RAVNIHMFCS RKPGLLLSTM 480 KALDNLGLDI QQAVISCFNG FALDVFRAEQ SKEGEEISPE QIKAVLLDSA GLHGVA

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MLPKSTGILW LDGDHHDGAS WNRTNNHNND DIAVAGSASS FKSMLQSDWY MNSTTPLNPS  60
NQDFHSLSSH PDVRDLPFNS NPPDNLLLRP IDSSSACSAS QAFAMDPSHS QSMLPPQKSC  120
FPSLFNVACS SNFENGFDLG GENGLLGSYQ GNQVSNSSGM MGFNGISSLP QIGNQELSLN  180
NAEFPVADNP PAFGAGFNPT DAFESFDGCG NALFQNRSKA LRPPESFPQV GGTQPTLFQK  240
RAAHRVGSSG VDKLENLEVS GSKFGDGSMW MPNMERLMKN SDEDIEDDSL DISRLNYDSD  300
EANEYNKLED NVNAKNSGSN SNANTTVTDG NQKGKRKGMP AKNLMAERRR RKKLNDRLYM  360
LRSVVPKISK MDRASILGDA IDYLKELLQK INELHNELES TPPPPGSSLQ PPASIHPLTP  420
TLPIPTLPNL PCRVKEELCP SSMSSPKAQP ARVEVRAREG RAVNIHMFCS RKPGLLLSTM  480
KALDNLGLDI QQAVISCFNG FALDVFRAEQ SKEGEEISPE QIKAVLLDSA GLHGVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	353	KRKGMPAKNLMAERRRRKK
2	347	354	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-106	bHLH family protein