PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527554.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 218aa MW: 25116.1 Da PI: 7.1811

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	7	54	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll ++v ++G g+W+++a+ g++Rt+k+c++rw++yl XP_023527554.1 7 KGPWTADEDSLLSHYVILHGEGHWNSVAHSTGLKRTGKSCRLRWLNYL 54 79********************************************97 PP
2	Myb_DNA-binding	48.1	2.7e-15	60	103	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Iar ++ gRt++++k++w++ XP_023527554.1 60 RGNITLQEQLLILQLHSRWGNR-WSKIARFLP-GRTDNEIKNYWRT 103 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MADHVKKGPW TADEDSLLSH YVILHGEGHW NSVAHSTGLK RTGKSCRLRW LNYLRPNVRR 60 GNITLQEQLL ILQLHSRWGN RWSKIARFLP GRTDNEIKNY WRTRVQKQAK QVKCDVNSQR 120 FHDTMRLVWI PRLVERIAAT SGQSLPACTE TSTSTPIISE STLDDNSVNV DVSASCSDTS 180 NWGDGFEAGW WEGDEVESSF ESLWTEENIR FLQQQLFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-68	MYB family protein