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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_023527654.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 1163aa MW: 129211 Da PI: 8.8266 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
W+++E e++++a +++G++ Wk++a+ + +R+ +++
XP_023527654.1 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81
6*****************99.*********.**98875 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1163 aa Download sequence |
MAPSRKSRSV NKRLSSANEA FSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLINCQR 120 DSESEQESNE NSGARRKPQK RLRGKSQNNN SKGLDAHFGD ASQSQSFPTN YGCLSLLKKR 180 RSGIKPHAVG KRTPRVPVSY SYDKDSRERF FSPSRHNSKP RVDDPNDDDV AHEIALVLTE 240 ASQRDGSPQL SQTPNPKIEG HVLSPTRNDR MQSESGMMNT KFRCSEMDEG GCELSLGSTG 300 ADNADYDLGK NSREIQRKGK RYHGKKPEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL 360 ETADLDVKSV RSSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDAN AETEPSAKVK 420 EENLDVMHKS KIKGNHSVAG AEISALKTSK KGKAFGNNVG PILESERIQG SNNGNRKRKL 480 KSSPFKISAK DEVNSDSRVG DTLKIKAADE AKSSVGKVKR SPHNAGLAKS GKLSKPLDHH 540 SSSSTDHKRE DGDYALSTAQ VPSTNPISLP TEVRSRRKMN LWKSQRDSKI SDNTLIDRLN 600 RPVQSIDDRP NDLKEQHSNC LSWHKLRRWC VYEWFYSAID FPWFAKCEFV EYLNHVGLGH 660 IPRLTRVEWG VIRSSLGRPR RFSAQFLKEE KQKLNQYRES VRKHYAELCA GTREGLPTDL 720 ARPLSVGQRV IAIHPKTREI HDGSVLTVDY SRCRVQFDRP ELGVEFVMDI ECMPLNPVEN 780 MPANLSRHGV TLGKIFGNLN EVKINGLLNE AKIEEYMKST SNDKLDSTDG SVFVSPINKL 840 IKQAKVDLGC SNLQAKFGLS ETVGIQQEAS SQSSALAQIQ AKEADVHALS ELSRALSKKE 900 VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS ALYCLRQRNT 960 YQGTLPLMFL KPVHDMGDSC SHAQEPSSHV AEIVGSSRAK AQTMIDEAMQ AILALKKGES 1020 NLENIEEAID FVSNRLSVDD LALPSVRSTA ADTSNSPPVS QNHFNVCTSN PSIADHVVGP 1080 KSNGLSDKTE VEIPSELIAH CVATLLMIQK CTERQFPPSD VAQVLDSAVS GLQPCCPQNL 1140 PLYAEIQKCM GIIRSQILAL IPT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 476 | 506 | RKRKLKSSPFKISAKDEVNSDSRVGDTLKIK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G21430.2 | 0.0 | MYB_related family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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