PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023527807.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 196aa    MW: 22380.2 Da    PI: 8.1923
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023527807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.4e-202779456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k
  XP_023527807.1 27 KKRLSSEQLESLERSFQEEIKLDPNRKQKLSKELGLQPRQIAVWFQNRRARWK 79
                    55699***********************************************9 PP
2HD-ZIP_I/II119.71.5e-3826117293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +Lr+ l+e
  XP_023527807.1  26 KKKRLSSEQLESLERSFQEEIKLDPNRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVIKLRSMLRE 117
                     9**************************************************************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MAGTSETVLQ GLVPGMDMNS YGNLDKKKRL SSEQLESLER SFQEEIKLDP NRKQKLSKEL  60
GLQPRQIAVW FQNRRARWKA KQLEHLYDTL KQEFDAISRE KHKLQEEVIK LRSMLRELQA  120
ARNQVSTVYT DLSGEETVES TSVGAGCSSK PRAVATAAAN QYPTPPEQCN YVFNTEEYNP  180
MSPTFWGSLP PTYHPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12655KKKRLSSEQLESLERSFQEEIKLDPNRKQK
27482RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-39HD-ZIP family protein