PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527808.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 460aa MW: 52200.1 Da PI: 6.0025

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.8	1.7e-24	107	206	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li+a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++++++++ + XP_023527808.1 107 KWTDMMVRLLITAVFYIGDEGGSEPmdhaskkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENHTL 201 7************99999998655556678889999******************************************55******* PP trihelix 82 fdqle 86 ++++e XP_023527808.1 202 LESME 206 *9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEPNSLGGGG GASGGMFPGI SSSMLGLELP LHQNPSNPHQ LHHPPMVSYA PHEAHHQQQP 60 PPAAVKSPYP AKPKPQQSNV SDEEEQGLAD DSNSDAKKKI SPWQRMKWTD MMVRLLITAV 120 FYIGDEGGSE PMDHASKKKP VGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY 180 KRVNDILGKG TACRVVENHT LLESMELTPK VKEEVRKLLN SKHLFFREMC AYHNTCRHGA 240 GNSGGNGANT SPEAGAEPSH LPQQQQQQRC FHATETAPAA TAGEGSKSGD EEEEDEDEDD 300 ESEEEDEEEE EEDIEGSSRV QEEEEETESK KRGRKEGFTA GIQQMSAEVM GVVQDGGRSP 360 WEKKQWMKRR LIQLEEQQVK YQSQGLEIEK QRLKWLKFRR KKERDMERAK LENEKRRLEN 420 ERMMLMVKQK ELDLTDLHNY QQQQQQHSSN RRGDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEPNSLGGGG GASGGMFPGI SSSMLGLELP LHQNPSNPHQ LHHPPMVSYA PHEAHHQQQP  60
PPAAVKSPYP AKPKPQQSNV SDEEEQGLAD DSNSDAKKKI SPWQRMKWTD MMVRLLITAV  120
FYIGDEGGSE PMDHASKKKP VGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY  180
KRVNDILGKG TACRVVENHT LLESMELTPK VKEEVRKLLN SKHLFFREMC AYHNTCRHGA  240
GNSGGNGANT SPEAGAEPSH LPQQQQQQRC FHATETAPAA TAGEGSKSGD EEEEDEDEDD  300
ESEEEDEEEE EEDIEGSSRV QEEEEETESK KRGRKEGFTA GIQQMSAEVM GVVQDGGRSP  360
WEKKQWMKRR LIQLEEQQVK YQSQGLEIEK QRLKWLKFRR KKERDMERAK LENEKRRLEN  420
ERMMLMVKQK ELDLTDLHNY QQQQQQHSSN RRGDPSSITG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	402	KQRLKWLKFRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-73	Trihelix family protein