PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528061.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 31557.4 Da PI: 8.4964

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	132	186	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_023528061.1 132 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 186 788899***********************************************98 PP
2	HD-ZIP_I/II	127.2	7.2e-41	132	221	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+ en+rL+kev+eLr +l XP_023528061.1 132 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELR-AL 221 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MGGRDDELRL TLSLGLGVTT RPSFQPTHIH RPSNSMHNHI RNGSWKELFQ FSDRNADSRS 60 FLRGIDVNRL PTVVDGEEEY GVSSPNSTVS SISGKRSERE AEAEAEAEAE ASRASCSQGS 120 DNEDGGGGDA SRKKLRLSKE QSMVLEETFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN 180 RRARTKLKQT EVDCEYLKRC CENLTGENRR LQKEVQELRA LKLSPQLYMH MNPPTTLTMC 240 PQCERVAVSS SSSTTCHPAA AAGVQRPSMP INPWAAVLPI ER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	SRKKLRL
2	181	189	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	7e-79	HD-ZIP family protein