PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528174.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 259aa    MW: 28798.6 Da    PI: 10.7373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-1658103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+ +  gR++k+c++rw++ 
   XP_023528174.1  58 RGHWRPAEDAKLKELVARYGPQNWNLIAENLR-GRSGKSCRLRWFNQ 103
                      899*****************************.***********996 PP
2Myb_DNA-binding54.33.1e-17112153346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ +eE+e+lv a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_023528174.1 112 AFNEEEEERLVTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 153
                      799*****************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MNLPPFNHAF PGNGLLQNPA LMPPPPPPPL PPPLPSSDGT AIVTKNNAPH RHTKLCARGH  60
WRPAEDAKLK ELVARYGPQN WNLIAENLRG RSGKSCRLRW FNQLDPRINR AAFNEEEEER  120
LVTAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKQR RSLRKIFQKN NVSGESTISS  180
TASTSAASRW CGGMGKVWGK TEEAMTAEQS GNSESNSDVS AAESVISTNL CLSSGWGNGR  240
RRQDHMKMEF IDFLGVGAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-61MYB family protein