PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528223.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 475aa MW: 51400.5 Da PI: 8.3636

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.7e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG+rC+F+H++ XP_023528223.1 49 ETDCIYYLRTGFCGYGSRCRFNHPR 73 578********************96 PP
2	zf-CCCH	38.1	2.5e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_023528223.1 95 QPVCQYYMRTGMCKFGASCKYHHPQ 119 689********************97 PP
3	zf-CCCH	28.3	3e-09	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++ +Ck+G++CkF+H++ XP_023528223.1 140 GEKECSYYLKNWQCKFGATCKFHHPE 165 7899****99**********96 PP
4	zf-CCCH	38.9	1.4e-12	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p XP_023528223.1 297 PGQPECQYYMRTGDCKFGSSCRYHHPP 323 5789*********************97 PP
5	zf-CCCH	33.6	6.4e-11	345	369	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G+ CkF H++ XP_023528223.1 345 APPCTHFMQRGMCKFGPACKFDHSM 369 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MNPYGHSMEP SHSDPSPEWT VSGPDTAHGE PLWPLGSRER ESYPERPEET DCIYYLRTGF 60 CGYGSRCRFN HPRERNAILG GSRLAGREYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPQQ 120 ERGSLSPVSL NFYGYPLRPG EKECSYYLKN WQCKFGATCK FHHPEPAGLQ FPAPSPIQVT 180 PVPAPSVYPP VQSPSAHSSQ QYGVILARPS LLSSPYVPGP YGPMLVSPGV FPSWSPYPTP 240 MSPVASPSAQ PSVGSGPLYG MAHVSPSAPV YAGSYQPMPS AGPSSTSQKE HSFPERPGQP 300 ECQYYMRTGD CKFGSSCRYH HPPEFVTSSP GVVLSQLGLP LRPGAPPCTH FMQRGMCKFG 360 PACKFDHSMD RLSYSPSASS LADMPVAPYP VGSVAGTLAP SSSSSELKPE HFSGSRKDSN 420 PSRMSSSMST STSGLVGSTT SRTEMYSHSS AQRSSQTSVP SQSSTSSTTS VEGRT

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MNPYGHSMEP SHSDPSPEWT VSGPDTAHGE PLWPLGSRER ESYPERPEET DCIYYLRTGF  60
CGYGSRCRFN HPRERNAILG GSRLAGREYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPQQ  120
ERGSLSPVSL NFYGYPLRPG EKECSYYLKN WQCKFGATCK FHHPEPAGLQ FPAPSPIQVT  180
PVPAPSVYPP VQSPSAHSSQ QYGVILARPS LLSSPYVPGP YGPMLVSPGV FPSWSPYPTP  240
MSPVASPSAQ PSVGSGPLYG MAHVSPSAPV YAGSYQPMPS AGPSSTSQKE HSFPERPGQP  300
ECQYYMRTGD CKFGSSCRYH HPPEFVTSSP GVVLSQLGLP LRPGAPPCTH FMQRGMCKFG  360
PACKFDHSMD RLSYSPSASS LADMPVAPYP VGSVAGTLAP SSSSSELKPE HFSGSRKDSN  420
PSRMSSSMST STSGLVGSTT SRTEMYSHSS AQRSSQTSVP SQSSTSSTTS VEGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-135	C3H family protein