PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528278.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 305aa MW: 34283.2 Da PI: 5.8311

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+ +W+++++ g+ R+ k+c++rw +yl XP_023528278.1 14 KGPWTPEEDIVLVSYIQQHGPANWRAVPANTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.2	5.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_023528278.1 67 RGNFTHHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MGRPPCCDKQ GVKKGPWTPE EDIVLVSYIQ QHGPANWRAV PANTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF THHEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKSLNNTN 120 HYPSPTTHLS GDALFTSRGQ WERRLQTDIQ MAKQALSDAL SPETSKPPPP PLPMSESQTP 180 NCQIPTYASS ADNIARWLEE WNKNPPTNSS CRSSSPPVVD SGGEKISGAG SSESMDTFLG 240 FDYFESSNSE VSPETSVFQG ESEMDESEGL LAMELLEEWL HGDAKDYYFT DITVDEKLKK 300 YDNLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	2e-93	MYB family protein